Supplementary Table S1. All sites differing between the PM1 mitogenome and the rCRS13. Only reads with a minimum mapping quality of 30 and alleles with a base quality of 30 or more were considered. The column PM1 does not show the consensus allele, it shows any alternative allele found among all reads covering that site. The private mutations of rCRS at positions 4769 and 8860 lacked enough coverage, based on our quality criteria, in the PM1 mitogenome.