Supplementary Information Table 8p gene expression in central nervous system (cns) Sources



Download 93 Kb.
Date26.11.2017
Size93 Kb.
Supplementary Information
Table S5. 8p GENE EXPRESSION IN CENTRAL NERVOUS SYSTEM (CNS)
Sources:
UCSC VISIGENE: http://www.genome.ucsc.edu/cgi-bin/hgUCSC VISIGENE

MGI Gene Expression data: http://www.informatics.jax.org/searches/expression.cgi

EUREXPRESS: http://www.eurexpress.org

miRBase: Sequences (SANGER INSTITUTE): http://microrna.sanger.ac.uk



ADRA1A
UCSC VISIGENE: There is no data.
MGI Gene expression data: It has been shown that this gene is expressed in brain by RT- PCR
EUREXPRESS: This gen is yet to be annotated in eurexpress.
CHRNA2
UCSC VISIGENE: expression in brain
MGI Gene expression data: It has been shown that this gene is expressed in brain by RT-PCR in cerebral cortex, olfatory bulb, cerebellum, medulla oblongata, spinal cord)
EUREXPRESS
Brain:

  • forebrain: telencephalon (in the mantle layer),

Spinal cord: bassal columns of the lateral wall of the (in the ventral grey horn)
CHRNA6
UCSC VISIGENE: expression in brain
MGI Gene expression data: It has been shown that this gene is expressed in brain by RT-PCR
EUREXPRESS
Brain:

  • midbrain:

    • diencephalon (in the mantle layer of lateral walll)

    • mantle layer of lateral wall.

CHRNB3
UCSC VISIGENE: expression in brain: olfactory bulb, basal forebrain, amygdala, cerebral cortex, entorhinal cortex, piriform cortex, subicular cortex, habenular nucleus, caudate putamen, internal capsule, cerebellum, hypothalamus, trapezoid body, ventral striatum, septum, fornix, globus pallidus, thalamus, hippocampus, midbrain, pons, medulla, stria terminalis, thalamus, trigeminal nerve, optic tract, pituitary gland, fasciculus retroflexus, habenular nucleus, dorsal funiculu, dorsal root ganglia, lateral funiculus, spinal cord dorsal horn, spinal cord ventral horn, ventral funiculus.
MGI Gene expression data: Present in brainsterm
EUREXPRESS


  • midbrain:

    • diencephalon (in the mantle layer of lateral wall)

    • mantle layer of lateral wall.


DPYSL2
UCSC VISIGENE: expression in brain
MGI Gene expression data: expression in brain
EUREXPRESS: This assay is yet to be annotated in eurexpress
EGR3
UCSC VISIGENE: expresión in central nervous system (only visual information without anatomic structures annotated).
MGI Gene expression data: expresión in central nervous system
EUREXPRESS: It is no expressed in brain.
FGF17
UCSC VISIGENE: expression in brain: future midbrain, future rhombencephalon, surface ectoderm, medial-nasal process-ectoderm, olfactory pit, medial-nasal process-ectoderm, embryo-ectoderm, future spinal cord-neural tube.
MGI Gene expression data: present in future midbrain, future rhombencephalon, surface ectoderm, future spinal cord, neural tube, forebrain, hypothalamus, septum, hindbrain, midbrain
EUREXPRESS


  • Forebrain: the ventricular layer of telencephalon.

  • Hindbrain: in cerebellum, in the ventricular layer.



FGF20
UCSC VISIGENE: There is no annotated expression in brain.
MGI Gene expression data: central nervous system; ganglion; cranial; trigeminalV
EUREXPRESS: This gen is yet to be annotated in eurexpress
FGFR1
UCSC VISIGENE: embryo-ectoderm, cerebral cortex, spinal cord-lateral wall-ventricular layer.
MGI Gene expression data: future midbrain, future prosencephalon, anterior pro-rhombomere, early hindbrain neural ectoderm, posterior pro-rhombomere, future spinal cord, prosencephalon, diencephalon, cerebral cortex, cortical plate, corpus striatum, hippocampus, lateral ventricle, 4th ventricle, spinal cord (lateral wall; ventricular layer), pons, corpus striatum, olfactory bulb, cerebellum
EUREXPRESS: This assay is yet to be annotated in eurexpress
FZD3
UCSC VISIGENE: no annotated expression in brain.
MGI Gene expression data: Diencephalon, hypothalamus, thalamus, telencephalon, amygdala, basal forebrain, basal ganglia, cerebral cortex, neocórtex, corpus striatum, hippocampus, olfactory bulb, olfactory cortex, piriform cortex, pallidum, septum, hindbrain, medulla oblongata, cerebellum, pons, midbrain, pretectum, inferior colliculus, superior colliculus, midbrain; tegmentum, spinal cord.
EUREXPRESS: This gen is yet to be annotated in eurexpress
NAT2
UCSC VISIGENE: No data annotated expression in brain.
MGI Gene expression data: No expression in brain
EUREXPRESS: No data annotated expression in brain.

NEF3
UCSC VISIGENE: expresion in brain: future rhombencephalon (single cells), central nervous system-ganglion-cranial-trigeminal V, segmental spinal nerve.
MGI Gene expression data: future midbrain, future rhombencephalon, facio-acoustic VII-VIII preganglion complex , trigeminal V preganglion, hindbrain, midbrain, future spinal cord, peripheral nervous system, spinal cord, cerebral cortex, corpus striatum, hippocampus, olfactory bulb, cerebellum, midbrain
EUREXPRESS
Brain:

  • Forebrain:

    • telencephalon (in the mantle layer)

    • diencephalon: in the mantle layer of lateral wall.

  • Midbrain: in the mantle layer of lateral wall

  • Hindbrain:

      • medulla oblongata, in the basal plate of lateral wall,.

      • metencephalon in the alar plate (in mantle and marginal layers of cerebellum) and in the basal plate (pons).

Craneal ganglion:



  • facial VII 

  • glossopharyngeal IX

  • trigeminal V

  • vagus X

  • vestibulocochlear VIII

Spinal cord: in the mantle layer of lateral wall



NRG1
UCSC VISIGENE: future rhombencephalon, future spinal cord, central nervous system-ganglion-cranial, dorsal root ganglion, facio-acoustic ganglion complex VII-VIII, glossopharyngeal IX, trigeminal V, vagus X, dorsal root ganglion, spinal cord, telencephalon.
MGI Gene expression data: future rhombencephalon, future spinal cord, facio-acoustic ganglion complex VII-VIII, glossopharyngeal IX, trigeminal V, vagus X, diencephalon, telencephalon; ventricular layer;olfactory lobe, medulla oblongata, pons, midbrain, spinal cord, peripheral nervous system; autonomic; sympathetic; ganglion, corpus striatum, forebrain; hippocampus, cerebral cortex; ventricular zone, telencephalon; olfactory lobe, hindbrain; meninges; pia mater, cerebellum

EUREXPRESS


Brain:

- forebrain



  • telencephalon: olfactory lobe (olfactory cortex) and ventricular layer

  • diencephalon: hypothalamus (mantle layer) and lateral wall (mantle layer).

- midbrain: lateral wall (mantle layer)

- hindbrain



  • medulla oblongata: lateral wall (mantle layer of bassal plate)

  • metencephalon: lateral wall

    • alar plate: cerebellum(mantle layer of rest of cerebellum)

    • basal plate: pons (mantle layer)

Cranial ganglion:


  • facial VII

  • glossopharyngeal IX

  • trigeminal V

  • vestibulocochlear VIII 


Spinal cord: in lateral wall (in ventral grey horn)

PCM1
UCSC VISIGENE: Expression in brain no annotated
MGI Gene expression data: No data
EUREXPRESS: This gen is yet to be annotated in eurexpress

PPP3CC
UCSC VISIGENE: Expression in brain no annotated
MGI Gene expression data: No data
EUREXPRESS: This gen is yet to be annotated in eurexpress
VMAT1
UCSC VISIGENE: No data
MGI Gene expression data: expression in brainstem, cerebral cortex, olfactory bulb, cerebellum, medulla oblongata
EUREXPRESS: This gen is yet to be annotated in eurexpress
MIR124-1
UCSC VISIGENE: No data
MGI Gene expression data: No data
EUREXPRESS: This gen is yet to be annotated in eurexpress
miRBase:Sequences (SANGER INSTITUTE): expression in brain

"Human embryonic stem cells express a unique set of microRNAs" Suh MR, Lee Y, Kim JY, Kim SK, Moon SH, Lee JY, Cha KY, Chung HM, Yoon HS, Moon SY, Kim VN, Kim KS Dev Biol. 270:488-498(2004).

"Numerous microRNPs in neuronal cells containing novel microRNAs" Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G RNA. 9:180-186(2003).

"Identification of tissue-specific microRNAs from mouse" Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T Curr Biol. 12:735-739(2002).


MIR320
UCSC VISIGENE: No data
MGI Gene expression data: No data
EUREXPRESS: This gen is yet to be annotated in eurexpress
miRBase:Sequences (SANGER INSTITUTE): No expression in brain

"Reduced accumulation of specific microRNAs in colorectal neoplasia" Michael MZ, O' Connor SM, van Holst Pellekaan NG, Young GP, James RJ Mol Cancer Res. 1:882-891(2003).

"Altered expression profiles of microRNAs during TPA-induced differentiation of HL-60 cells" Kasashima K, Nakamura Y, Kozu T Biochem Biophys Res Commun. 322:403-410(2004).

"A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).

"Patterns of known and novel small RNAs in human cervical cancer" Lui WO, Pourmand N, Patterson BK, Fire A Cancer Res. 67:6031-6043(2007).

8p: LPL, ARHGEF10, DKK4, PLAT, SFRP1



LPL
http://www.genepaint.org/
Mouse:
Central Nervous System:

- Telencephalon  

- Cerebral Cortex: Neocortex  

- Basal Ganglia: Amygdala 

- Mesencephalon (Midbrain)

- Superior Colliculus  

- Tegmentum  

- Rhombencephalon (Hindbrain)  

- Pons  

- Medulla Oblongata 

- Spinal Cord  

- Other 


- Choroid Plexus  
ARHGEF10
http://www.genepaint.org/
Mouse:
Central Nervous System: Spinal Cord  

http://humancortex.alleninstitute.org
Human:
Cerebral Cortex: Visual Cortex, Temporal Cortex
DKK4
No expression annotated
PLAT
http://www.genome.ucsc.edu
telencephalon

spinal cord-floor plate

spinal cord-lateral wall-ventricular layer
SFRP1
http://www.genome.ucsc.edu
Mouse
Mouse blastocyst and postimplantation development:


  • inner cell mass

  • embryo, extraembryonic component, visceral endoderm

Mouse embryo:



  • trunk mesenchyme-paraxial mesenchyme-somite-dermomyotome, unsegmented mesenchyme

  • forebrain: telencephalon


http://www.ncbi.nlm.nih.gov/sites/entrez?term=19701&cmd=search&db=gensat


  • Anterior commissure

  • Cerebellum

  • Cerebral cortex

  • Hippocampus

  • Hypothalamus

  • Midbrain

  • Olfactory bulb

  • Pons+Medulla

  • Dorsal root ganglio

  • Spinal Cord Dorsal Horn

  • Spinal Cord Ventral Horn

Directory: journal -> v14
journal -> Oral Health status of 9 to 12 year old school going children in Urban Meerut. Sharma S, Parashar P, Srivastava A, Bansal R. Department of Community Medicine, Subharti Medical College, Meerut. Introduction
journal -> Title: The replacement of missing mandibular incisor with single-crown mini-implant restoration. Authors
journal -> Effectiveness of three different application times of 17% edta and 7% Maleic Acid irrigation agents on the removal of debris and the smear layer: an sem study Running title
journal -> Comparison of the Impact of Long-Term Applications of mtad and edta irrigation Agents on Dentin Structure: An sem study Running title
journal -> Supplementary Figure Legends
journal -> Supplementary materials and methods Bacterial strains and culture conditions
v14 -> Disorder Gene
v14 -> Supplementary information: Clinical reports -cdh patients with chromosome deletions
v14 -> Supplementary Table 1
v14 -> Supplemental Table a comprehensive list of caspase substrates


Share with your friends:


The database is protected by copyright ©dentisty.org 2019
send message

    Main page