10th anniversary International Multiconference «Bioinformatics of Genome Regulation and Structure\ Systems Biology»



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10th anniversary International Multiconference

«Bioinformatics of Genome Regulation and Structure\ Systems Biology»

Novosibirsk, Russia, 29 August – 2 September, 2016

BGRS\SB-2016 MM&HPC-BBB-2016 SBioMed-2016 CSGB 2016

29 August, Monday

08:30-10:00

Registration (House of Scientists SB RAS, main entrance)

10.20–16.00

Plenary session (House of Scientists SB RAS, Large hall)

Chairpersons: Prof. Nikolay Kolchanov, Prof. Ralf Hofestädt

10:20-11.00

Opening Ceremony (House of Scientists SB RAS, Large Hall)

11.00–11.40

Aging and cancer: state-of-art and prospects for prevention

Vladimir Anisimov

Department of Carcinogenesis and Oncogerontology, N.N. Petrov Research Institute of Oncology, Saint Petersburg, Russia



11.40–12.20

Postgenome medicine as n-of-one science

Andrey Lisitsa, E.V. Kolker, H. Huan-Wen Chen, V.E. Frankevich

Institute of Biomedical Chemistry, Moscow, Russia



12.20–13.00

Active maintenance of phylotranscriptomic hourglass patterns in plant and animal embryogenesis

H.G. Drost1, A. Gabel1, I. Ivo Grosse1,2, M. Quint3,4



1Institute of Computer Science, Martin Luther University Halle-Wittenberg, Halle, Germany

2German Centre for Integrative Biodiversity Research Halle-Jena-Leipzig, Leipzig, Germany

3Department of Molecular Signal Processing, Leibniz Institute of Plant Biochemistry, Halle, Germany

4Institute of Agricultural and Nutritional Sciences, Martin Luther University Halle-Wittenberg, Halle, Germany

13.00–14.00

Lunch

14.00–14.40

Genetics of Aging and Dementia

Evgeny Rogaev

University of Massachusetts, USA



14.40–15.20

Regulation of RIPKs in cell survival and cell death by apoptosis and necroptosis, insights and therapeutic potential

Peter Vandenabeele

VIB Inflammation Research Center, Zwijnaarde-Ghent, Belgium

Department of Biomedical Molecular Biology, Ghent University, Ghent, Belgium


15.20–16.00

Macroevolutionary and experimental assays of fitness landscapes

Fyodor Kondrashov

Centre for Genomic Regulation, Barcelona, Spain



16.00–16.40

Coffee break with Thomson Reuters.

Coffee with Thomson Reuters. Integrity - essential knowledge to empower your drug discovery and development

Sergey Paramonov, Vladimir Poroikov

Thomson Reuters, Moscow, Russia






Time

Small hall


Time

Library

Time

223

Time

Music Hall

Time

Exhibition Hall




BGRS\SB




BGRS\SB




CSGB




SBioMED




MM-HPC-BBB

























15:00–17:45

Afternoon session “Mathematical modelling of gene networks: direct and inverse problems”

Chairs: Prof Vladimir Golubyatnikov, Prof Ralf Hofestädt

























15:00–15:30

Geometry of phase portrait of one gene network model with variable feedbacks

Vladimir Golubyatnikov1,2, M.V. Kazantsev3 , N.B. Ayupova1,2

1Sobolev Institute of Mathematics SB RAS, Novosibirsk, 2NSU, Novosibirsk, Russia 3Polzunov Altai State Technical University, Barnaul, Russia

























15:30–15:45

Computer analysis of biological networks of mammalian circadian oscillator

Nikolai Podkolodnyy1-3, O.A. Podkolodnaya1, N.N. Tverdokhleb1,3

1ICG SB RAS, 2Institute of Computational Mathematics and Mathematical Geophysics SB RAS, 3NSU, Novosibirsk, Russia

16.40–19.10

Section “Systems Computational Biology”

Chairperson: Alexander Ratushny, Celgene, and Institute for Systems Biology, Seattle, USA



















15:45–16:00

Functional graphs of discrete dynamical systems of almost circulant type

Anastasiya Parfinenko

Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia



16.40–17.10

Evolution of phenotypic control by new genes through integrating and rewiring of ancestral expression networks

Manyuan Long

Department of Ecology and Evolution, The University of Chicago, Chicago, USA





















16:00–16:15

Two models of the drosophila gap gene network with variation of mathernal input

Konstantin Kozlov1, A.V. Svichkarev1, V.V. Gursky1,2, I.V. Kulakovskiy3, S.Y. Surkova1, M.G. Samsonova1

1Peter the Great St. Petersburg Polytechnic University, St. Petersburg, 195251, Russia  

2Ioffe Institute, St. Petersburg, 194021, Russia

3Engelhardt Institute of Molecular Biology, RAS, Moscow, 119991, Russia

17.10–17.40

KATIS: integrative information system for complementary medicine

Ralf Hofestädt, V. Ogultarhan and A. Shoshi

University Bielefeld, Bielefeld, Germany





















16:15–16:30

Stochastic pattern formation induced by cell-to- cell communications in elastic epithelial tissue

Dmitryi Bratsun1, I.V. Krasnyakov2

1Perm National Research Polytechnic University; 2Perm State Humanitarian Pedagogical University, Perm, Russia

17.40–18.10

FAIRDOM: Data and Model Management for Systems Biology Projects

Olga Krebs1, R. Kuzyakiv5, M. Golebiewski1, S. Owen2, Q. Nguyen1, N. Stanford2, K. Wolstencroft4, J.L. Snoep2,3, B. Rinn5, W. Mueller1, C. Goble2   

1Heidelberg Institute for Theoretical Studies, Germany; 2School of Computer Science, University of Manchester, UK;3Department of Biochemistry, University of Stellenbosch, South Africa; 4Leiden Institute of Advanced Computer Science, Leiden University, NL; 5ETH Zurich, Swiss



















16:30–16:45

An inverse problem for a system with a small parameter in kinetics models

Larisa Kononenko

Sobolev Institute of Mathematics, Novosibirsk, Russia



16:45–17:00

Euclidean analogues of genetic distances between nucleotide sequences

Vadim Efimov1-4, K.V. Efimov5, V.Y. Kovaleva2

1ICG SB RAS, Novosibirsk, Russia

2Institute of Systematics and Ecology of Animals, SB RAS, Novosibirsk, Russia

3NSU, Novosibirsk, Russia

4Tomsk State University, Tomsk, 634050, Russia

5Moscow Institute of Physics and Technology (State University), Moscow, 141701, Russia

18.10–18.40

Two models of the drosophila gap gene network with variation of maternal input

Konstantin Kozlov1, A.V. Svichkarev1, V.V. Gursky1,2, I.V. Kulakovskiy3, S.Y. Surkova1, and M.G. Samsonova1

1Peter the Great St. Petersburg Polytechnic University, 2Ioffe Institute, St. Petersburg; 3Engelhardt Institute of Molecular Biology RAS, Moscow, Russia



















17:00–17:15

Symmetrical genetic code and genetic mutations

Boris Biletskyi, A.M. Gupal

V.M. Glushkov Institute of Cybernetics NAS of Ukraine, Kiev, Ukraine



17:15–17:30

Cycles of discrete dynamical systems of a circulant type with a threshold function in the vertices of the network

Tsyndyma Batueva

Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia



18.40–19.10

Elemental metabolomics–linking environmental, food, nutrition and health sciences

P. Zhang1, I. Giannenas2, C.A. Georgiou3, Vladimir Brusic1,4

1Menzies Health Institute Queensland, Griffith University, Australia

2Aristotle University of Thessaloniki, Thessaloníki, Greece

3Department of Food Science and Nutrition, Agricultural University of Athens, Greece

4School of Medicine and Bioinformatics Center, Nazarbayev University, Kazakhstan



















17:15–17:45

Genome tree theory

Igor Erokhin

National Biotechnological Company LLC, Moscow, Russia

19.40–22.00

WELCOME PARTY

30 August, Tuesday

Time

Small hall

Time

Library

Time

223

Time

Music Hall

Time

Exhibition Hall




BGRS\SB




BGRS\SB




CSGB




SBioMED




MM-HPC-BBB



9.00–13.10

Section “Genomics, Transcriptomics and Bioinformatics”

Chairpersons: Ivo Grosse, Halle-Wittenberg University, Halle, Germany; Vsevolod Makeev, VIGG RAS, MIPT, Moscow, Russia







9.00 – 13.00

Symposium «Cognitive Sciences, Genomics and Bioinformatics” (CSGB- 2016)



09:00−09:10

Opening remarks

Vladimir Konenkov

SICEL, Novosibirsk, Russia



9:00–13:00

Morning session “High-performance computing in natural sciences”

Chairpersons: Igor Kulikov, Igor Chernykh

9.00–9.30

Transcription by alternative sigma factors: revising the rigidness paradigm

Jelena Guzina, M. Djordjevic

University of Belgrade, Belgrade, Serbia









9.00–9:30

National Technology Initiative (NTI): NeuroNet and CoBrain strategies and prospects

Lubomir Aftanas1

1 Scientific Research Institute of Physiology and Basic Medicine, Novosibirsk, Russia

09:10−10:50

Cell Technology and Regenerative Medicine

Chairs: Vladimir Konenkov, Elena Chernych



9:00–9:30

Realistic 3D simulation of C. elegans swimming and crawling with sibernetic environment

Andrey Palyanov1-3, S.S. Khayrulin1-3

1Institute of Informatics Systems SB RAS, Novosibirsk, Russia; 2NSU, Novosibirsk, Russia; 3OpenWorm Project

09:10−09:30

Migration of bone marrow cells: research technology

Alexander Poveshchenko, L.A. Shundrin, P.A. Avrorov, A.O. Solovieva, T.V. Miller, K.E. Zubareva, O.V. Poveshchenko, V.I. Konenkov

SICEL, Novosibirsk, Russia



9.30–10.00

Reconstruction of transcription control network in genome-reduced bacteria by high-throughput promoters identification

Irina Garanina, G.U. Fisunov., D.V. Evsutina, V.M. Govorun

Scientific Research Institute of Physical-Chemical Medicine SRI PCM, Moscow, Russia









9.30–10:00

Approaches to the study of oscillatory resting-state networks

Gennady Knyazev1

1Scientific Research Institute of Physiology and Basic Medicine, Novosibirsk, Russia

09:30−09:45

Study of motility of osteogenic cells in tissue engineering protocols

N. Astakhova, S.V. Nikolaev, K.E. Orishchenko3, A.V. Korel¹, U.S. Zubairova3, I.A. Kirilova

1Institute of Traumatology and Orthopedics Y.L. Tsivyan; 2Innovative Medical Technology, Novosibirsk, Russia; 3Institute of Cytology and Genetics of SB RAS, Novosibirsk, Russia

9:30–9:45


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